PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15486_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 247aa    MW: 27289.9 Da    PI: 4.743
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15486_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77.1e-1964113255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  RrC15486_p1  64 SYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 113
                  6*****888.**********854...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-2064121IPR016177DNA-binding domain
SMARTSM003801.1E-3664127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-3164122IPR001471AP2/ERF domain
PfamPF008476.1E-1364113IPR001471AP2/ERF domain
PROSITE profilePS5103223.61764121IPR001471AP2/ERF domain
CDDcd000187.74E-3365123No hitNo description
PRINTSPR003671.2E-106576IPR001471AP2/ERF domain
PRINTSPR003671.2E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEKQINIESS VSHHQDNVTT STEAAATSSS QSWSSSKRSL EQDNEPGLKR RKNNGGDGNE  60
TPTSYRGVRK RSWGKWVSEI REPKKKSRIW LGTYPTAEMA ARAHDVAALA IKGSSGYLNF  120
PELSGLLPRP VSCSPKDIQA AAAKAAEATW QEPVIHEKLA EELSHAELST AQSSTSSGFV  180
FSSDTSETSS TDKESIEETV FDLPDLFTGG LINQNDAFRY YDSTSTWQLY GEDGVFRLEE  240
PFIWLDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1665121360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00414DAPTransfer from AT3G60490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893190.0AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116730.11e-132PREDICTED: ethylene-responsive transcription factor ERF035
SwissprotQ9M2101e-102ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBLM4CTJ51e-132M4CTJ5_BRARP; Uncharacterized protein
STRINGBra007539.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.17e-94ERF family protein